Home  ›  Unequal Crossover and the Evolution of Multigene Families

Unequal Crossover and the Evolution of Multigene Families

Written By sábado, 5 de marzo de 2022 Add Comment Edit

Repetitive Deoxyribonucleic acid

Editor(s): Garrido-Ramos, M.A. (Granada)

The Birth-and-Decease Evolution of Multigene Families Revisited

Eirín-López J.1000.a · Rebordinos Fifty.b · Rooney A.P.d · Rozas J.c

aCHROMEVOL-XENOMAR Group, Departamento de Biología Celular y Molecular, Universidade da Coruña, A Coruña, bÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, Cádiz, cDepartament de Genètica y Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain; dCrop Bioprotection Inquiry Unit, National Center for Agronomical Utilization Research, Agricultural Research Service, US Section of Agriculture, Peoria, Ill., USA

Related Manufactures for ""

Garrido-Ramos MA (ed): Repetitive Deoxyribonucleic acid. Genome Dyn. Basel, Karger, 2012, vol 7, pp 170–196

  • Abstract
  • Get article
  • Login / Register

Log in to MyKarger to cheque if you lot already take access to this content.

Buy

  • FullText & PDF
  • Unlimited re-admission via MyKarger
  • Unrestricted printing, no saving restrictions for personal use

read more

CHF 38.00 *
EUR 35.00 *
USD 39.00 *

Select

KAB

Buy a Karger Article Bundle (KAB) and profit from a discount!

If y'all would like to redeem your KAB credit, please log in.

Salve over 20% compared to the private article price.

Learn more

Rent/Cloud

  • Hire for 48h to view
  • Buy Cloud Access for unlimited viewing via different devices
  • Synchronizing in the ReadCube Deject
  • Press and saving restrictions apply

Rental: USD 8.l
Cloud: USD 20.00

Select

Complete book

  • Firsthand access to all parts of this book
  • Cover-to-encompass formats may be bachelor
  • Unlimited re-admission via MyKarger
  • Unrestricted printing, no saving brake for personal utilize

read more

Pricing depends on difficult-cover price

Select

* The terminal prices may differ from the prices shown due to specifics of VAT rules.

Article / Publication Details

Kickoff-Folio Preview

Abstract of Paper

Published online: June 25, 2012
Encompass Date: 2012

Number of Impress Pages: 27
Number of Figures: iii
Number of Tables: 0

ISBN: 978-iii-318-02149-3 (Print)
eISBN: 978-3-318-02150-9 (Online)

Abstruse

For quite some fourth dimension, scientists accept wondered how multigene families come into existence. Over the last several decades, a number of genomic and evolutionary mechanisms have been discovered that shape the development, structure and organization of multigene families. While gene duplication represents the cadre procedure, other phenomena such as pseudogene formation, cistron loss, recombination and natural option have been establish to act in varying degrees to shape the evolution of factor families. How these forces influence the fate of gene duplicates has ultimately led molecular evolutionary biologists to enquire the question: How and why exercise some duplicates gain new functions, whereas others deteriorate into pseudogenes or even get deleted from the genome? What ultimately lies at the heart of this question is the desire to empathise how multigene families originate and diversify. The birth-and-death model of multigene family evolution provides a framework to answer this question. Nonetheless, the growing availability of molecular information has revealed a much more than complex scenario in which the birth-and-death process interacts with dissimilar mechanisms, leading to evolutionary novelty that tin be exploited by a species as means for adaptation to diverse selective challenges. Here nosotros provide an upwardly-to-date review into the role of the birth-and-expiry model and the relevance of its interaction with forces such as genomic drift, selection and concerted evolution in generating and driving the evolution of different archetypal multigene families. Nosotros discuss the scientific evidence supporting the notion of birth-and-death as the major mechanism guiding the long-term development of multigene families.

© 2012 S. Karger AG, Basel

References

  1. Ohno Due south: Evolution past Factor Duplication. Berlin, Springer-Verlag 1970;
  2. Yang Z: Computational Molecular Evolution. Oxford Oxford University Printing, 2006;
  3. Demuth JP, Hahn MW: The life and expiry of gene families. Bioessays 2009;31:29-39
  4. Gabaldon T: Large-scale assignment of orthology: dorsum to phylogenetics? Genome Biol. 2008;9:235
  5. Martins C, Wasko AP: Organization and evolution of 5S ribosomal DNA in the fish genome. (eds) Williams CL: Focus on Genome Research. Hauppauge Nova, Scientific discipline Publishers, 2004;335-363
  6. Nei M, Rooney AP: Concerted and birth-and-death evolution in multigene families. Annu Rev Genet 2005;39:121-152
  7. Lynch Yard: The Origins of Genome Architecture. Sunderlands MA, Sinauer Associates 2007;
  8. Hahn MW: Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution. Genome Biol 2007;8:R141
  9. Csuros K: Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood. Bioinformatics 2010;26:1910-1912
  10. Iwasaki Due west, Takagi T: Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. Bioinformatics 2007;23i:230-239
  11. Vernot B, Stolzer K, Goldman A, Durand D: Reconciliation with non-binary species trees. Comput Syst Bioinformatics Conf 2007;six:441-452
  12. Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, et al: Tree pattern matching in phylogenetic trees automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics 2005;21:2596-2603
  13. Vieira FG, Sanchez-Gracia A, Rozas J: Comparative genomic analysis of the odorant-bounden protein family in 12 Drosophila genomes: purifying selection and birth-and-expiry evolution. Genome Biol 2007;8:R235
  14. Ingram VM: Factor evolution and the haemoglobins. Nature 1961;189:704-708
  15. Nei Thousand, Hughes AL: Balanced polymorphism and evolution by the birth-and-death process in the MHC loci. (eds) Tsuji K, Aizawa M, Sasazuki T: 11th Histocompatibility Workshop and Briefing Oxford, Oxford University Press, 1992;27-38
  16. Rooney AP, Piontkivska H, Nei Thousand: Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family unit. Mol Biol Evol 2002;xix:68-75
  17. Rooney AP: Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in apicomplexans. Mol Biol Evol 2004;21:1704-1711
  18. Rooney AP, Ward TJ: Evolution of a large ribosomal RNA multigene family in filamentous fungi: nativity and death of a concerted evolution paradigm. Proc Natl Acad Sci The states 2005;102:5084-5089
  19. Zhang J, Dyer KD, Rosenberg HF: Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive option. Proc Natl Acad Sci USA 2000;97:4701-4706
  20. Vieira FG, Rozas J: Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory arrangement. Genome Biol Evol 2011;3:476-490
  21. Rooney AP, Ward TJ: Birth-and-death evolution of the internalin multigene family in Listeria. Gene 2008;427:124-128
  22. Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al: Evolution of genes and genomes on the Drosophila phylogeny. Nature 2007;450:203-218
  23. Sanchez-Gracia A, Vieira FG, Rozas J: Molecular evolution of the major chemosensory gene families in insects. Heredity 2009;103:208-216
  24. De Bie T, Cristianini N, Demuth JP, Hahn MW: CAFE: a computational tool for the report of gene family unit evolution. Bioinformatics 2006;22:1269-1271
  25. Hahn MW, Han MV, Han SG: Factor family evolution across 12 Drosophila genomes. PLoS Genet 2007;iii:e197
  26. Nei M: The new mutation theory of phenotypic evolution. Proc Natl Acad Sci USA 2007;104:12235-12242
  27. Long EO, Dawid IB: Repeated genes in eukaryotes. Annu Rev Biochem 1980;49:727-764
  28. Nei 1000, Niimura Y, Nozawa M: The development of animate being chemosensory receptor factor repertoires: roles of chance and necessity. Nat Rev Genet 2008;9:951-963
  29. Nam J, Nei M: Evolutionary modify of the numbers of homeobox genes in bilateral animals. Mol Biol Evol 2005;22:2386-2394
  30. Durnad D, Halldórsson BV, Vernot B: A hybrid micro-macroevolutionary arroyo to gene tree reconstruction. J Comput Biol 2006;13:320-335
  31. Goodman K, Czelusniak J, Moore GW, Romero-Herrera AE, Matsuda G: Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst Zool 1979;28:132-163
  32. Page R: Maps between trees and cladistic analysis of historical associations among genes, organisms and areas. Syst Zool 1994;43:58-77
  33. Page R, Charleston Chiliad: From gene to organismal phylogeny: Reconciled copse and the gene tree/species tree problem. Mol Phylogenet Evol 1997;7:231-240
  34. Antony B, Fuji T, Moto K, Matsumoto Southward, Fukuzawa Thousand, et al: Pheromone-gland-specific fat-acyl reductase in the adzuki edible bean borer, Ostrinia scapulalis (Lepidoptera: Crambidae). Insect Biochem Mol Biol 2009;39:90-95
  35. Moto K, Yoshiga T, Yamamoto M, Takahashi Southward, Okano Grand, et al: Pheromone gland-specific fatty-acyl reductase of the silkmoth, Bombyx mori. Proc Natl Acad Sci USA 2003;100:9156-9161
  36. Miwa T: Jojoba oil wax esters and derived fat acids and alcohols: gas chromatographic analyses. J Am Oil Chem Soc 1971;48:259-264
  37. Rowland O, Zheng H, Hepworth SR, Lam P, Jetter R, et al: CER4 encodes an booze-forming fat acyl-coenzyme A reductase involved in cuticular wax production in Arabidopsis. Institute Physiol 2006;142:866-877
  38. Thatcher Thursday, Gorovsky MA: Phylogenetic assay of the core histones H2A, H2B, H3, and H4. Nucleic Acids Res 1994;22:174-179
  39. Eirin-Lóez JM, Ausió J: Origin and evolution of chromosomal sperm proteins. Bioessays 2009;31:1062-1070
  40. Eirín-López JM, GonzÁlez-Romero R, Dryhurst D, Méndez J, Ausió J: Long-term development of histone families: onetime notions and new insights into their diversification mechanisms across eukaryotes. (eds) Pontarotti P: Evolutionary Biology: Concept, Modeling, and Application Berlin, Springer-Verlag, 2009;139-162
  41. Zlatanova J, Bishop TC, Victor JM, Jackson Five, van Holde K: The nucleosome family: dynamic and growing. Structure 2009;17:160-171
  42. Eirin-López JM, Frehlick LJ, Ausió J: Protamines, in the footsteps of linker histone evolution. J Biol Chem 2006;281:1-4
  43. Talbert Lead, Henikoff S: Histone variants - aboriginal wrap artists of the epigenome. Nat Rev Mol Jail cell Biol 2010;11:264-275
  44. Zalensky AO, Siino JS, Gineitis AA, Zalenskaya IA, Tomilin NV, et al: Human testis/sperm-specific histone H2B (hTSH2B). Molecular cloning and label. J Biol Chem 2002;277:43474-43480
  45. Churikov D, Siino J, Svetlova M, Zhang M, Gineitis A, et al: Novel man testis-specific histone H2B encoded past the interrupted gene on the 10 chromosome. Genomics 2004;84:745-756
  46. Govin J, Escoffier E, Rousseaux S, Kuhn 50, Ferro K, et al: Pericentric heterochromatin reprogramming by new histone variants during mouse spermiogenesis. J Cell Biol 2007;176:283-294
  47. González-Romero R, Rivera-Casas C, Ausió J, Méndez J, Eirin-López JM: Birth-and-decease long-term evolution promotes histone H2B variant diversification in the male germinal jail cell line. Mol Biol Evol 2010;27:1802-1812
  48. Eirin-López JM, Ishibashi T, Ausió J: H2A.Bbd: a quickly evolving hypervariable mammalian histone that destabilizes nucleosomes in an acetylation-contained way. FASEB J 2008;22:316-326
  49. Wolfe SA, Grimes SR: Protein-Deoxyribonucleic acid interactions within the rat histone H4t promoter. J Biol Chem 1991;266:6637-6643
  50. Li A, Maffey AH, Abbott WD, Conde due east Silva North, Prunell A, et al: Characterization of nucleosomes consisting of the human testis/sperm-specific histone H2B variant (hTSH2B). Biochemistry 2005;44:2529-2535
  51. Campo D, Machado-Schiaffino G, Horreo JL, Garcia-Vazquez Eastward: Molecular arrangement and evolution of 5S rDNA in the genus Merluccius and their phylogenetic implications. J Mol Evol 2009;68:208-216
  52. Cantankerous I, Vega L, Rebordinos L: Nucleolar organizing regions in Crassostrea angulata: chromosomal location and polymorphism. Genetica 2003;119:65-74
  53. Merlo MA, Cantankerous I, Chairi H, Manchado Chiliad, Rebordinos 50: Analysis of three multigene families as useful tools in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids. Genes Genet Syst 2010;85:341-349
  54. Cross I, Rebordinos Fifty: 5S rDNA and U2 snRNA are linked in the genome of Crassostrea angulata and Crassostrea gigas oysters: Does the (CT)n(GA)n microsatellite stabilize this novel linkage of big tandem arrays? Genome. 2005;48:1116-1119
  55. Ubeda-Manzanaro Chiliad, Merlo MA, Palazon JL, Sarasquete C, Rebordinos L: Sequence characterization and phylogenetic analysis of the 5S ribosomal Dna in species of the family unit Batrachoididae. Genome 2010;53:723-730
  56. Insua A, Freire R, Rios J, Méndez J: The 5S rDNA of mussels Mytilus galloprovincialis and M. edulis: sequence variation and chromosomal location. Chromosome Res 2001;9:495-505
  57. Freire R, Arias A, Insua A, Méndez J, Eirin-Lopez JM: Evolutionary dynamics of the 5S rDNA gene family in the mussel Mytilus: mixed furnishings of birth-and-death and concerted evolution. J Mol Evol 2010;70:413-426
  58. Kellogg EA, Appels R: Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives. Genetics 1995;140:325-343
  59. Pinhal D, Araki CS, Gadig OB, Martins C: Molecular arrangement of 5S rDNA in sharks of the genus Rhizoprionodon: insights into the evolutionary dynamics of 5S rDNA in vertebrate genomes. Genet Res (Camb) 2009;91:61-72
  60. Pinhal D, Yoshimura TS, Araki CS, Martins C: The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: an example from freshwater stingrays. BMC Evol Biol 2011;11:151
  61. Robles F, de la Herran R, Ludwig A, Rejon CR, Rejon MR, et al: Genomic organization and evolution of the 5S ribosomal DNA in the ancient fish sturgeon. Genome 2005;48:18-28
  62. Manchado 1000, Zuasti E, Cross I, Merlo A, Infante C, et al: Molecular label and chromosomal mapping of the 5S rRNA cistron in Solea senegalensis: A new linkage to the U1, U2, and U5 pocket-size nuclear RNA genes. Genome 2006;49:79-86
  63. Sajdak SL, Reed KM, Phillips RB: Intraindividual and interspecies variation in the 5S rDNA of coregonid fish. J Mol Evol 1998;46:680-688
  64. Lopez-Piñon MJ, Freire R, Insua A, Mendez J: Sequence characterization and phylogenetic analysis of the 5S ribosomal DNA in some scallops (Bivalvia: Pectinidae). Hereditas 2008;145:nine-nineteen
  65. Tamura K, Dudley J, Nei M, Kumar Due south: MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007;24:1596-1599
  66. Hedges SB, Kumar Due south: The Fourth dimension Tree of Life New York, Oxford University Printing, 2009;

Article / Publication Details

First-Folio Preview

Abstract of Paper

Published online: June 25, 2012
Cover Date: 2012

Number of Print Pages: 27
Number of Figures: iii
Number of Tables: 0

ISBN: 978-3-318-02149-3 (Print)
eISBN: 978-3-318-02150-nine (Online)

Copyright / Drug Dosage / Disclaimer

Copyright: All rights reserved. No function of this publication may be translated into other languages, reproduced or utilized in whatever grade or by any means, electronic or mechanical, including photocopying, recording, microcopying, or by whatever information storage and retrieval system, without permission in writing from the publisher.
Drug Dosage: The authors and the publisher have exerted every endeavour to ensure that drug selection and dosage gear up forth in this text are in accordance with current recommendations and practice at the fourth dimension of publication. Withal, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for whatever changes in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug.
Disclaimer: The statements, opinions and data contained in this publication are solely those of the individual authors and contributors and not of the publishers and the editor(s). The appearance of advertisements or/and product references in the publication is not a warranty, endorsement, or approval of the products or services advertised or of their effectiveness, quality or safety. The publisher and the editor(s) disclaim responsibility for any injury to persons or property resulting from whatsoever ideas, methods, instructions or products referred to in the content or advertisements.

jacksonsmisprome1960.blogspot.com

Source: https://www.karger.com/Article/Fulltext/337119

0 Response to "Unequal Crossover and the Evolution of Multigene Families"

Publicar un comentario

Suscribirse a: Enviar comentarios (Atom)

Iklan Atas Artikel

Iklan Tengah Artikel 1

Iklan Tengah Artikel 2

Iklan Bawah Artikel